Directory of Methods

Nucleic Acids

DNA
Tail DNA for regular genotyping
Animal tail DNA for realtime PCR genotyping
DNA cleaning during cloning
DNA endblunting
Plasmid endofree maxiprep Qiagen
Plasmid miniprep Eppendorf
Plasmid miniprep Qiagen
DNA loading buffer (6 X)
Tail DNA extraction for regular genotyping - an alternative inexpensive method
Tail DNA extraction for genotyping - Another easy method
RNA
DEPC water
Total RNA extraction
Reverse transcription
Total RNA extraction (RNeasy plus kit)
PCR
Real time PCR
Regular PCR
PCR primer design
PCR recipes
Mouse DGAT1
Cre recombinase
Human Adiponectin
Human beta Actin
Human GAPDH
Mouse Adiponectin
Mouse alpha cardiacmyosin heavy chain
Mouse AP2
Mouse Beta Actin
Mouse Elastase I
Mouse GAPDH
Mouse Glucagon
Mouse Insulin
Mouse LPL
Mouse Podocin
Mouse PPAR gamma2
Mouse spliced XBP 1
Mouse CD68
Mouse MCP1
Mouse Bip (GRP78)
Mouse ERdj4
Mouse CHOP
Mouse EDEM1
Mouse Sec61a
Mouse Leptin
Rat alpha-MHC
Rat beta-MHC
Rat ANF
Rat BNF
Rat beta-Actin
Rat GAPDH
Rat 18s rRNA
Rat aSMA
Rat adiponectin (NM_144744)
Rat leptin
Rat spliced Xbp1
Rat Bip
Rat ERdj4
Rat CHOP
Rat EDEM1
Human beta-actin

Proteins

Quantitative Western blotting
Laemmli sample buffer (5X)
SDS-PAGE gel selection
Mouse tissue extraction
Protein precipitation
Nuclear and Cytosolic Fractionation
Ponceau S solution
Odyssey scanner from Li-Cor
Tris glycine electrophoresis buffer

Antibody

Anti beta Actin antibody
Anti Cyclophilin antibody
Anti GFP antibody
Anti HA antibody
Anti human Adiponectin antibody
Anti human IkBA antibody
Anti human PPARg antibody
Anti mouse Adiponectin antibody
Anti Myc antibody
Anti human Akt1 antibody
Anti phospho-Akt(Ser473) antibody
anti HDAC1 antibody
anti HDAC2 antibody
anti Bip antibody

Immunohistochemistry

Immunohistochemistry
Immunohistochemistry GFP
Immunohistochemistry Glucagon
Immunohistochemistry Glut2
Immunohistochemistry Insulin
Immunohistochemistry c-fos
Immunohistochemistry Mac-2
Immunofluorescence
Immunofluorescence 3T3-L1 adipocytes
Immunofluorescence Insulin Glut2
Immunofluorescence Insulin BrdU
Immunofluorescence Insulin Glucagon
Immunofluorescence beta Cell TUNEL
Immunofluorescence TUNEL staining heart
Immunofluorescence Insulin MafA

Virus

Lentivirus general
Lentivirus titration
Lentivirus production
Retrovirus packaging and infection
Lentivirus titration using qRT-PCR

Mouse Genetics

Transgenic mouse general
Tamoxifen treatment

Mouse Genotyping Protocols

Mouse obob
Rosa26-rtTA-IRES-EGFP transgenic mouse
ATTAC transgenic mouse model
Adiponectin knockout mouse model
Cre transgenic mouse model
TRE-IkBa transgenic mouse model
TRE-IKK transgenic mouse model
Conditional knockout of MGAT1 mouse model
aMHC-tTA transgenic mouse model
MKR mouse model
Resistin knockout mouse model
Inducible Cre (MCM)

Metabolic Research

Oral glucose tolerance test (OGTT)
Pancreatic insulin content measurement
Insulin tolerance test (ITT)
3T3-L1 adipocyte differentiation
BrdU labeling of mouse beta cells
Intraperitoneal glucose tolerance test (IPGTT)
Glucose assay
Glucose measurement using a glucometer
PPAR gamma agonist treatment
ATTAC mouse model dimerizer administration
Mouse perfusion
In vivo insulin signaling
Leucine incoporation in neonatal cardiomyocytes
Fibroblast contraction assay
Bioinformatics ( coming soon )
Site News
New feature:
You can add comments on protocols now. Just go to any individual method page and click on the "Add a comment" link.

Highlight of the month
Autophagy hits heart

Autophagy is acutely upregulated to provide necessary nutrients during starvation for survival. Under normal condition, constitutive autophagy is critical to perform house-keeping functions to eliminate damaged organelles and dysfunctional long-lived proteins.

Ageing is associated with accumulation of dysfunctional proteins in cells. Autophagic activity is decreasing along with ageing. Studies in worms and flies show that reconstitution of autophagy can increase life span. A recent report by Taneike and colleagues explored the role of autophagy in age-related cardiomyopathy.

In heart, autophagic activity is decreasing when ageing. Taneike et al eliminated autophagy in heart by knocking out an essential gene, ATG5, specifically in heart. The researchers found deteriorated cardiac function at 10 months of age in the deficient animals compared to wild type controls. The dysfunction of autophagy causes accumulation of dysfunctional mitochondrial, reduced mitochondrial efficiency and significant oxidative damage in cardiomyocytes. More interestingly, evidence of mitochondrial damage is obvious as early as 3 months old, before cardiac remodeling and dysfunction manifest. This study points to a possibility that autophagy is critical in maintaining cardiomyocyte homeostasis and autophagy may be a target for future therapeutic design for heart failure.... Read more highlights.